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Regulation of species metabolism in synthetic community systems by environmental pH oscillations

Nature Communications [2023]
Li Shubin, Zhao Yingming, Wu Shuqi, Zhang Xiangxiang, Yang Boyu, Tian Liangfei, Han Xiaojun
ABSTRACT

Constructing a synthetic community system helps scientist understand the complex interactions among species in a community and its environment. Herein, a two-species community is constructed with species A (artificial cells encapsulating pH-responsive molecules and sucrose) and species B ( Saccharomyces cerevisiae ), which causes the environment to exhibit pH oscillation behaviour due to the generation and dissipation of CO 2 . In addition, a three-species community is constructed with species A′ (artificial cells containing sucrose and G6P), species B, and species C (artificial cells containing NAD + and G6PDH). The solution pH oscillation regulates the periodical release of G6P from species A′; G6P then enters species C to promote the metabolic reaction that converts NAD + to NADH. The location of species A′ and B determines the metabolism behaviour in species C in the spatially coded three-species communities with CA′B, CBA′, and A′CB patterns. The proposed synthetic community system provides a foundation to construct a more complicated microecosystem.

MATERIALS

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